FastQCFastQC Report
Thu 15 Dec 2022
EGAF00007545181

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007545181
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences328609
Sequences flagged as poor quality0
Sequence length40-51
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCATAATCGGAGGCTTTGGCAACTGACTAGTTCCCCTAATAATCGGTGCCC15970.48598790660024527No Hit
GCTAAGGGAGGGTAGACTGTTCAACCTGTTCCTGCTCCGGCCTCCACTAT12870.3916508677486009No Hit
CCTTATTCGAGCCGAGCTGGGCCAGCCAGGCAACCTTCTAGGTAACGACC6960.21180186787336927No Hit
CCTAATTGGGGGGTAGGGGCTAGGCTGGAGTGGTAAAAGGCTCAGAAAAAT5190.15793846181936586No Hit
CCGATTATGATGGGTATTACTATGAAGAAGATTATTACAAATGCATGGGCT4560.1387667410204833No Hit
CCTCATACTAGGCCTACTAACCAACACACTAACCATATACCAATGATGGCG4190.12750715896399673No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)