FastQCFastQC Report
Wed 8 May 2024
EGAF00007545183

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007545183
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences311754
Total Bases15.7 Mbp
Sequences flagged as poor quality0
Sequence length39-51
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCATAATCGGAGGCTTTGGCAACTGACTAGTTCCCCTAATAATCGGTGCC14900.4779409406134324No Hit
GCTAAGGGAGGGTAGACTGTTCAACCTGTTCCTGCTCCGGCCTCCACTAT11830.379465860903148No Hit
CCTTATTCGAGCCGAGCTGGGCCAGCCAGGCAACCTTCTAGGTAACGACC7140.22902673261610118No Hit
CCTAATTGGGGGGTAGGGGCTAGGCTGGAGTGGTAAAAGGCTCAGAAAAA4900.15717520865810863No Hit
CCTCATACTAGGCCTACTAACCAACACACTAACCATATACCAATGATGGC4630.1485145338953149No Hit
CCGATTATGATGGGTATTACTATGAAGAAGATTATTACAAATGCATGGGC4250.13632543608101258No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)