FastQCFastQC Report
Thu 15 Dec 2022
EGAF00007545190

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007545190
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences205270
Sequences flagged as poor quality0
Sequence length41-51
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCATAATCGGAGGCTTTGGCAACTGACTAGTTCCCCTAATAATCGGTGCCC9660.47059969795878603No Hit
GCTAAGGGAGGGTAGACTGTTCAACCTGTTCCTGCTCCGGCCTCCACTAT7290.35514200808690993No Hit
CCTTATTCGAGCCGAGCTGGGCCAGCCAGGCAACCTTCTAGGTAACGACC3640.1773274224192527No Hit
CCTAATTGGGGGGTAGGGGCTAGGCTGGAGTGGTAAAAGGCTCAGAAAAAT2640.12861109757879866No Hit
CCGATTATGATGGGTATTACTATGAAGAAGATTATTACAAATGCATGGGCT2390.11643201636868515No Hit
CCTCATACTAGGCCTACTAACCAACACACTAACCATATACCAATGATGGCG2070.10084279241973987No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)