FastQCFastQC Report
Thu 15 Dec 2022
EGAF00007545192

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007545192
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences192769
Sequences flagged as poor quality0
Sequence length40-51
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCATAATCGGAGGCTTTGGCAACTGACTAGTTCCCCTAATAATCGGTGCCC8820.4575424471777101No Hit
GCTAAGGGAGGGTAGACTGTTCAACCTGTTCCTGCTCCGGCCTCCACTAT6440.3340786122249947No Hit
CCTTATTCGAGCCGAGCTGGGCCAGCCAGGCAACCTTCTAGGTAACGACC2940.15251414905923671No Hit
CCGATTATGATGGGTATTACTATGAAGAAGATTATTACAAATGCATGGGCT2400.12450134617080547No Hit
CCTAATTGGGGGGTAGGGGCTAGGCTGGAGTGGTAAAAGGCTCAGAAAAAT2370.12294507934367041No Hit
CCTCATACTAGGCCTACTAACCAACACACTAACCATATACCAATGATGGCG2350.12190756812558035No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)