FastQCFastQC Report
Thu 15 Dec 2022
EGAF00007545224

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007545224
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences153666
Sequences flagged as poor quality0
Sequence length38-51
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCATAATCGGAGGCTTTGGCAACTGACTAGTTCCCCTAATAATCGGTGCCC8050.523863444093033No Hit
GCTAAGGGAGGGTAGACTGTTCAACCTGTTCCTGCTCCGGCCTCCACTAT6020.3917587494956594No Hit
CCTTATTCGAGCCGAGCTGGGCCAGCCAGGCAACCTTCTAGGTAACGACC3140.2043392812984004No Hit
CCTAATTGGGGGGTAGGGGCTAGGCTGGAGTGGTAAAAGGCTCAGAAAAAT2160.14056460114794422No Hit
CCGATTATGATGGGTATTACTATGAAGAAGATTATTACAAATGCATGGGCT1810.11778792966563845No Hit
CCTCATACTAGGCCTACTAACCAACACACTAACCATATACCAATGATGGCG1600.104121926776255No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)