FastQCFastQC Report
Thu 15 Dec 2022
EGAF00007545226

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007545226
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences187380
Sequences flagged as poor quality0
Sequence length40-51
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCATAATCGGAGGCTTTGGCAACTGACTAGTTCCCCTAATAATCGGTGCCC11450.6110577436225851No Hit
GCTAAGGGAGGGTAGACTGTTCAACCTGTTCCTGCTCCGGCCTCCACTAT8650.4616287757498132No Hit
CCTTATTCGAGCCGAGCTGGGCCAGCCAGGCAACCTTCTAGGTAACGACC4480.23908634859643504No Hit
CCGATTATGATGGGTATTACTATGAAGAAGATTATTACAAATGCATGGGCT2880.15369836695485112No Hit
CCTAATTGGGGGGTAGGGGCTAGGCTGGAGTGGTAAAAGGCTCAGAAAAAT2300.12274522360977694No Hit
ATCATAATCGGAGGCTTTGGCAACTGACTAGTTCCCCTAATAATCGGTGCC2190.11687479987191803No Hit
CCTCATACTAGGCCTACTAACCAACACACTAACCATATACCAATGATGGCG1990.10620130216672002No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)