FastQCFastQC Report
Wed 8 May 2024
EGAF00007545228

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007545228
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences175572
Total Bases8.8 Mbp
Sequences flagged as poor quality0
Sequence length38-51
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCATAATCGGAGGCTTTGGCAACTGACTAGTTCCCCTAATAATCGGTGCC10880.6196887886451142No Hit
GCTAAGGGAGGGTAGACTGTTCAACCTGTTCCTGCTCCGGCCTCCACTAT7900.4499578520493017No Hit
CCTTATTCGAGCCGAGCTGGGCCAGCCAGGCAACCTTCTAGGTAACGACC4050.23067459503793314No Hit
CCGATTATGATGGGTATTACTATGAAGAAGATTATTACAAATGCATGGGC2590.14751782744401157No Hit
CCTAATTGGGGGGTAGGGGCTAGGCTGGAGTGGTAAAAGGCTCAGAAAAA2190.12473515139088237No Hit
ATCATAATCGGAGGCTTTGGCAACTGACTAGTTCCCCTAATAATCGGTGC2090.11903948237760008No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)