FastQCFastQC Report
Thu 15 Dec 2022
EGAF00007545245

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007545245
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences354052
Sequences flagged as poor quality0
Sequence length40-51
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCATAATCGGAGGCTTTGGCAACTGACTAGTTCCCCTAATAATCGGTGCCC21870.6177058737134657No Hit
GCTAAGGGAGGGTAGACTGTTCAACCTGTTCCTGCTCCGGCCTCCACTAT16570.4680103487623287No Hit
CCTTATTCGAGCCGAGCTGGGCCAGCCAGGCAACCTTCTAGGTAACGACC10270.2900703851411657No Hit
CCTAATTGGGGGGTAGGGGCTAGGCTGGAGTGGTAAAAGGCTCAGAAAAAT6640.18754307276897178No Hit
CCTCATACTAGGCCTACTAACCAACACACTAACCATATACCAATGATGGCG5340.15082530249793816No Hit
CCCTTAGCAGGGAACTACTCCCACCCTGGAGCCTCCGTAGACCTAACCATC4680.13218397297572107No Hit
CCGATTATGATGGGTATTACTATGAAGAAGATTATTACAAATGCATGGGCT4590.12964197349541876No Hit
ATCATAATCGGAGGCTTTGGCAACTGACTAGTTCCCCTAATAATCGGTGCC4360.1231457526013128No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)