FastQCFastQC Report
Wed 8 May 2024
EGAF00007545248

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007545248
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences333394
Total Bases16.8 Mbp
Sequences flagged as poor quality0
Sequence length38-51
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCATAATCGGAGGCTTTGGCAACTGACTAGTTCCCCTAATAATCGGTGCC20340.6100889638085868No Hit
GCTAAGGGAGGGTAGACTGTTCAACCTGTTCCTGCTCCGGCCTCCACTAT15350.46041620425082636No Hit
CCTTATTCGAGCCGAGCTGGGCCAGCCAGGCAACCTTCTAGGTAACGACC9820.29454639255655474No Hit
CCTAATTGGGGGGTAGGGGCTAGGCTGGAGTGGTAAAAGGCTCAGAAAAA6320.1895654990791676No Hit
CCGATTATGATGGGTATTACTATGAAGAAGATTATTACAAATGCATGGGC4640.13917467021002178No Hit
CCTCATACTAGGCCTACTAACCAACACACTAACCATATACCAATGATGGC4460.13377565283118473No Hit
ATCATAATCGGAGGCTTTGGCAACTGACTAGTTCCCCTAATAATCGGTGC3920.11757860069467357No Hit
CCCTTAGCAGGGAACTACTCCCACCCTGGAGCCTCCGTAGACCTAACCAT3810.11427920118538426No Hit

[OK]Adapter Content

Adapter graph