FastQCFastQC Report
Thu 15 Dec 2022
EGAF00007545252

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007545252
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences473887
Sequences flagged as poor quality0
Sequence length40-51
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCATAATCGGAGGCTTTGGCAACTGACTAGTTCCCCTAATAATCGGTGCCC8720.18401011211533552No Hit
GCTAAGGGAGGGTAGACTGTTCAACCTGTTCCTGCTCCGGCCTCCACTAT6560.13842962562805056No Hit
CCTTATTCGAGCCGAGCTGGGCCAGCCAGGCAACCTTCTAGGTAACGACC4940.10424426076258686No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)