FastQCFastQC Report
Thu 15 Dec 2022
EGAF00007545258

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007545258
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences190320
Sequences flagged as poor quality0
Sequence length41-51
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCATAATCGGAGGCTTTGGCAACTGACTAGTTCCCCTAATAATCGGTGCCC11570.6079234972677596No Hit
GCTAAGGGAGGGTAGACTGTTCAACCTGTTCCTGCTCCGGCCTCCACTAT9630.5059899117276166No Hit
CCTTATTCGAGCCGAGCTGGGCCAGCCAGGCAACCTTCTAGGTAACGACC5060.2658680117696511No Hit
CCTAATTGGGGGGTAGGGGCTAGGCTGGAGTGGTAAAAGGCTCAGAAAAAT4160.2185792349726776No Hit
CCGATTATGATGGGTATTACTATGAAGAAGATTATTACAAATGCATGGGCT3280.1723413198823035No Hit
CCTCATACTAGGCCTACTAACCAACACACTAACCATATACCAATGATGGCG3010.15815468684321143No Hit
ATCATAATCGGAGGCTTTGGCAACTGACTAGTTCCCCTAATAATCGGTGCC2250.11822194199243378No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)