FastQCFastQC Report
Thu 15 Dec 2022
EGAF00007545260

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007545260
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences180088
Sequences flagged as poor quality0
Sequence length41-51
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCATAATCGGAGGCTTTGGCAACTGACTAGTTCCCCTAATAATCGGTGCCC11710.6502376615876683No Hit
GCTAAGGGAGGGTAGACTGTTCAACCTGTTCCTGCTCCGGCCTCCACTAT8650.4803207320865355No Hit
CCTTATTCGAGCCGAGCTGGGCCAGCCAGGCAACCTTCTAGGTAACGACC5000.27764204166851764No Hit
CCTAATTGGGGGGTAGGGGCTAGGCTGGAGTGGTAAAAGGCTCAGAAAAAT4160.23099817866820668No Hit
CCTCATACTAGGCCTACTAACCAACACACTAACCATATACCAATGATGGCG3310.18379903158455865No Hit
CCGATTATGATGGGTATTACTATGAAGAAGATTATTACAAATGCATGGGCT2620.1454844298343032No Hit
ATCATAATCGGAGGCTTTGGCAACTGACTAGTTCCCCTAATAATCGGTGCC2150.11938607791746259No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)