FastQCFastQC Report
Thu 15 Dec 2022
EGAF00007545262

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007545262
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences375109
Sequences flagged as poor quality0
Sequence length40-51
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCATAATCGGAGGCTTTGGCAACTGACTAGTTCCCCTAATAATCGGTGCCC25560.6814019391696813No Hit
GCTAAGGGAGGGTAGACTGTTCAACCTGTTCCTGCTCCGGCCTCCACTAT19200.5118512219114978No Hit
CCTAATTGGGGGGTAGGGGCTAGGCTGGAGTGGTAAAAGGCTCAGAAAAAT10940.29164856081832213No Hit
CCTTATTCGAGCCGAGCTGGGCCAGCCAGGCAACCTTCTAGGTAACGACC10780.2873831339690597No Hit
CCTCATACTAGGCCTACTAACCAACACACTAACCATATACCAATGATGGCG8570.22846692561362164No Hit
CCGATTATGATGGGTATTACTATGAAGAAGATTATTACAAATGCATGGGCT7280.19407692164144288No Hit
ATCATAATCGGAGGCTTTGGCAACTGACTAGTTCCCCTAATAATCGGTGCC4970.13249482150521583No Hit
GCCCATGACCCCTAACAGGGGCCCTCTCAGCCCTCCTAATGACCTCCGGCC4520.1204983084916651No Hit
GCTTGTAGGAGGGTAAAATAGAGACCCAGTAAAATTGTAATGAGCAGTGCT4510.12023171931358617No Hit
CCTACAAGCCTCAGAGTACTTCGAGTCTCCCTTCACCATTTCCGACGGCAT4450.11863218424511275No Hit
CCCTTAGCAGGGAACTACTCCCACCCTGGAGCCTCCGTAGACCTAACCATC4370.11649947082048151No Hit
CCTAAGATAGAGGAGACACCTGCTAGGTGTAAGGAGAAGATGGTTAGGTCT3900.10396977945077299No Hit
CCACTATAGCAGATGCGAGCAGGAGTAGGAGAGAGGGAGGTAAGAGTC3830.10210365520422063No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)