FastQCFastQC Report
Thu 15 Dec 2022
EGAF00007545272

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007545272
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences150033
Sequences flagged as poor quality0
Sequence length39-51
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCATAATCGGAGGCTTTGGCAACTGACTAGTTCCCCTAATAATCGGTGCCC7700.5132204248398686No Hit
GCTAAGGGAGGGTAGACTGTTCAACCTGTTCCTGCTCCGGCCTCCACTAT6010.4005785393880013No Hit
CCTTATTCGAGCCGAGCTGGGCCAGCCAGGCAACCTTCTAGGTAACGACC3710.2472789319683003No Hit
CCTAATTGGGGGGTAGGGGCTAGGCTGGAGTGGTAAAAGGCTCAGAAAAAT2290.1526330873874414No Hit
CCTCATACTAGGCCTACTAACCAACACACTAACCATATACCAATGATGGCG2180.14530136703258617No Hit
CCGATTATGATGGGTATTACTATGAAGAAGATTATTACAAATGCATGGGCT1990.13263748641965434No Hit
ATCATAATCGGAGGCTTTGGCAACTGACTAGTTCCCCTAATAATCGGTGCC1620.10797624522605026No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)