FastQCFastQC Report
Thu 15 Dec 2022
EGAF00007545286

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007545286
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences326678
Sequences flagged as poor quality0
Sequence length38-51
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCATAATCGGAGGCTTTGGCAACTGACTAGTTCCCCTAATAATCGGTGCCC19580.5993669607380968No Hit
GCTAAGGGAGGGTAGACTGTTCAACCTGTTCCTGCTCCGGCCTCCACTAT14650.44845382915286613No Hit
CCTTATTCGAGCCGAGCTGGGCCAGCCAGGCAACCTTCTAGGTAACGACC6880.21060493819602177No Hit
CCGATTATGATGGGTATTACTATGAAGAAGATTATTACAAATGCATGGGCT5590.1711165122842677No Hit
CCTAATTGGGGGGTAGGGGCTAGGCTGGAGTGGTAAAAGGCTCAGAAAAAT4410.13499531648901977No Hit
ATCATAATCGGAGGCTTTGGCAACTGACTAGTTCCCCTAATAATCGGTGCC4070.124587514310728No Hit
CCTCATACTAGGCCTACTAACCAACACACTAACCATATACCAATGATGGCG3840.11754694224894238No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)