FastQCFastQC Report
Thu 15 Dec 2022
EGAF00007545289

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007545289
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences308476
Sequences flagged as poor quality0
Sequence length39-51
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCATAATCGGAGGCTTTGGCAACTGACTAGTTCCCCTAATAATCGGTGCCC18700.6062059933349758No Hit
GCTAAGGGAGGGTAGACTGTTCAACCTGTTCCTGCTCCGGCCTCCACTAT13180.42726176428636264No Hit
CCTTATTCGAGCCGAGCTGGGCCAGCCAGGCAACCTTCTAGGTAACGACC6800.2204385430309003No Hit
CCGATTATGATGGGTATTACTATGAAGAAGATTATTACAAATGCATGGGCT5080.164680558617202No Hit
CCTAATTGGGGGGTAGGGGCTAGGCTGGAGTGGTAAAAGGCTCAGAAAAAT4160.13485652044243313No Hit
CCTCATACTAGGCCTACTAACCAACACACTAACCATATACCAATGATGGCG3760.12188954732296839No Hit
ATCATAATCGGAGGCTTTGGCAACTGACTAGTTCCCCTAATAATCGGTGCC3580.11605440941920928No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)