FastQCFastQC Report
Wed 8 May 2024
EGAF00007545301

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007545301
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences364342
Total Bases18.4 Mbp
Sequences flagged as poor quality0
Sequence length39-51
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCATAATCGGAGGCTTTGGCAACTGACTAGTTCCCCTAATAATCGGTGCC20390.5596390204807571No Hit
GCTAAGGGAGGGTAGACTGTTCAACCTGTTCCTGCTCCGGCCTCCACTAT15000.41170109402704047No Hit
CCTTATTCGAGCCGAGCTGGGCCAGCCAGGCAACCTTCTAGGTAACGACC9100.24976533037640458No Hit
CCTAATTGGGGGGTAGGGGCTAGGCTGGAGTGGTAAAAGGCTCAGAAAAA6540.17950167699578967No Hit
CCGATTATGATGGGTATTACTATGAAGAAGATTATTACAAATGCATGGGC5340.1465655894736264No Hit
CCTCATACTAGGCCTACTAACCAACACACTAACCATATACCAATGATGGC5290.1451932524935363No Hit
ATCATAATCGGAGGCTTTGGCAACTGACTAGTTCCCCTAATAATCGGTGC4330.1188443824758057No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)