FastQCFastQC Report
Thu 15 Dec 2022
EGAF00007545301

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007545301
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences364342
Sequences flagged as poor quality0
Sequence length39-51
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCATAATCGGAGGCTTTGGCAACTGACTAGTTCCCCTAATAATCGGTGCCC20360.558815618292703No Hit
GCTAAGGGAGGGTAGACTGTTCAACCTGTTCCTGCTCCGGCCTCCACTAT15000.41170109402704047No Hit
CCTTATTCGAGCCGAGCTGGGCCAGCCAGGCAACCTTCTAGGTAACGACC9090.24949086298038653No Hit
CCTAATTGGGGGGTAGGGGCTAGGCTGGAGTGGTAAAAGGCTCAGAAAAAT6480.17785487261968153No Hit
CCGATTATGATGGGTATTACTATGAAGAAGATTATTACAAATGCATGGGCT5330.1462911220776084No Hit
CCTCATACTAGGCCTACTAACCAACACACTAACCATATACCAATGATGGCG5280.14491878509751827No Hit
ATCATAATCGGAGGCTTTGGCAACTGACTAGTTCCCCTAATAATCGGTGCC4330.1188443824758057No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)