FastQCFastQC Report
Fri 10 May 2024
EGAF00007545307

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007545307
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences24039
Total Bases1.2 Mbp
Sequences flagged as poor quality0
Sequence length41-51
%GC53

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTAATTGGGGGGTAGGGGCTAGGCTGGAGTGGTAAAAGGCTCAGAAAAA430.17887599317775282No Hit
TCATAATCGGAGGCTTTGGCAACTGACTAGTTCCCCTAATAATCGGTGCC360.1497566454511419No Hit
GCTAAGGGAGGGTAGACTGTTCAACCTGTTCCTGCTCCGGCCTCCACTAT280.1164773909064437No Hit
GTCCAACCCTGTGATGATTGATGCCACTGCTTCCCATGTACTCTGCGTTG280.1164773909064437No Hit
CCTCATACTAGGCCTACTAACCAACACACTAACCATATACCAATGATGGC270.11231748408835641No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)