FastQCFastQC Report
Tue 7 May 2024
EGAF00007545328

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007545328
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences112239
Total Bases5.6 Mbp
Sequences flagged as poor quality0
Sequence length40-51
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCATAATCGGAGGCTTTGGCAACTGACTAGTTCCCCTAATAATCGGTGCC1270.1131514001372072No Hit
GCTAAGGGAGGGTAGACTGTTCAACCTGTTCCTGCTCCGGCCTCCACTAT1140.10156897335150883No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)