FastQCFastQC Report
Thu 15 Dec 2022
EGAF00007545342

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007545342
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences150137
Sequences flagged as poor quality0
Sequence length40-51
%GC63

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTATGGCCAGCCTTTCCAAGCTGTTCCGTTATGTCTTGTGCTATCACTA3830.25510034168792506No Hit
CCGAAAGGTATCGTTATCTGAATACATAGGGTAACGAGGCGAACCGGGTG3100.20647808335053983No Hit
GCAAATTGACACCGTAACTTCGGAAGAAGGTGTGCCCTATTAGTGTGAAGT1820.12122261667676855No Hit
GCGATAAGCTTCGGGGAGCTGGCAAATTAGCTTTGATCCGGAGATTTCCG1770.11789232500982437No Hit
GCATGAACGGGTTGCAAAAAATCGGTGGCTGCGACTGTTTATTAAAAACAC1750.11656020834304669No Hit
GGTAGTCCACGCCCTAAACGATGTCAACTGGTTGTTGGGTCTTCACTGACT1650.1098996250091583No Hit
CCTAAGGTAGCGAAATTCCTTGTCGGGTAAGTTCCGACCTGCACGAATGGC1630.10856750834238062No Hit
ACCTTAGGACCGTTATTGTTACGGCCGCCGTTTACTGGGACTTCAATCA1570.1045711583420476No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)