FastQCFastQC Report
Thu 15 Dec 2022
EGAF00007545352

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007545352
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences544967
Sequences flagged as poor quality0
Sequence length39-51
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCATAATCGGAGGCTTTGGCAACTGACTAGTTCCCCTAATAATCGGTGCCC27370.5022322452552173No Hit
GCTAAGGGAGGGTAGACTGTTCAACCTGTTCCTGCTCCGGCCTCCACTAT20500.3761695662306158No Hit
CCTTATTCGAGCCGAGCTGGGCCAGCCAGGCAACCTTCTAGGTAACGACC13130.2409320197369749No Hit
CCTAATTGGGGGGTAGGGGCTAGGCTGGAGTGGTAAAAGGCTCAGAAAAAT8290.15211930263667342No Hit
CCGATTATGATGGGTATTACTATGAAGAAGATTATTACAAATGCATGGGCT7630.1400084775775414No Hit
CCTCATACTAGGCCTACTAACCAACACACTAACCATATACCAATGATGGCG7290.13376956769859458No Hit
CCCTTAGCAGGGAACTACTCCCACCCTGGAGCCTCCGTAGACCTAACCATC5670.10404299709890691No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)