FastQCFastQC Report
Thu 15 Dec 2022
EGAF00007545353

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007545353
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences544967
Sequences flagged as poor quality0
Sequence length38-51
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCATAATCGGAGGCTTTGGCAACTGACTAGTTCCCCTAATAATCGGTGCCC27550.5055351975440715No Hit
GCTAAGGGAGGGTAGACTGTTCAACCTGTTCCTGCTCCGGCCTCCACTAT20930.3840599522539897No Hit
CCTTATTCGAGCCGAGCTGGGCCAGCCAGGCAACCTTCTAGGTAACGACC12730.23359212576174337No Hit
CCTAATTGGGGGGTAGGGGCTAGGCTGGAGTGGTAAAAGGCTCAGAAAAAT8160.14973383709472315No Hit
CCGATTATGATGGGTATTACTATGAAGAAGATTATTACAAATGCATGGGCT7990.14661438215524977No Hit
CCTCATACTAGGCCTACTAACCAACACACTAACCATATACCAATGATGGCG7080.12991612336159802No Hit
CCCTTAGCAGGGAACTACTCCCACCCTGGAGCCTCCGTAGACCTAACCATC5560.10202452625571823No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)