FastQCFastQC Report
Thu 15 Dec 2022
EGAF00007545355

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007545355
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences438149
Sequences flagged as poor quality0
Sequence length38-51
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCATAATCGGAGGCTTTGGCAACTGACTAGTTCCCCTAATAATCGGTGCCC22180.506220486638107No Hit
GCTAAGGGAGGGTAGACTGTTCAACCTGTTCCTGCTCCGGCCTCCACTAT17240.3934734530947235No Hit
CCTTATTCGAGCCGAGCTGGGCCAGCCAGGCAACCTTCTAGGTAACGACC10050.22937402573097282No Hit
CCGATTATGATGGGTATTACTATGAAGAAGATTATTACAAATGCATGGGCT6640.15154661998543875No Hit
CCTAATTGGGGGGTAGGGGCTAGGCTGGAGTGGTAAAAGGCTCAGAAAAAT5750.1312338953187158No Hit
CCTCATACTAGGCCTACTAACCAACACACTAACCATATACCAATGATGGCG4770.10886707489917813No Hit
ATCATAATCGGAGGCTTTGGCAACTGACTAGTTCCCCTAATAATCGGTGCC4540.1036177190864295No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)