FastQCFastQC Report
Wed 8 May 2024
EGAF00007545362

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007545362
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences243544
Total Bases12.3 Mbp
Sequences flagged as poor quality0
Sequence length39-51
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCATAATCGGAGGCTTTGGCAACTGACTAGTTCCCCTAATAATCGGTGCC14140.5805932398252471No Hit
GCTAAGGGAGGGTAGACTGTTCAACCTGTTCCTGCTCCGGCCTCCACTAT11130.45700160956541735No Hit
CCTTATTCGAGCCGAGCTGGGCCAGCCAGGCAACCTTCTAGGTAACGACC6370.2615543803173143No Hit
CCTAATTGGGGGGTAGGGGCTAGGCTGGAGTGGTAAAAGGCTCAGAAAAA5460.2241894688434123No Hit
CCTCATACTAGGCCTACTAACCAACACACTAACCATATACCAATGATGGC4070.16711559307558388No Hit
CCGATTATGATGGGTATTACTATGAAGAAGATTATTACAAATGCATGGGC3870.15890352461978122No Hit
ATCATAATCGGAGGCTTTGGCAACTGACTAGTTCCCCTAATAATCGGTGC2540.10429326938869363No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)