FastQCFastQC Report
Thu 15 Dec 2022
EGAF00007545364

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007545364
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences228657
Sequences flagged as poor quality0
Sequence length40-51
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCATAATCGGAGGCTTTGGCAACTGACTAGTTCCCCTAATAATCGGTGCCC13570.5934653214202933No Hit
GCTAAGGGAGGGTAGACTGTTCAACCTGTTCCTGCTCCGGCCTCCACTAT10920.47757120927852637No Hit
CCTTATTCGAGCCGAGCTGGGCCAGCCAGGCAACCTTCTAGGTAACGACC5300.23178822428353385No Hit
CCTAATTGGGGGGTAGGGGCTAGGCTGGAGTGGTAAAAGGCTCAGAAAAAT4980.21779346357207519No Hit
CCGATTATGATGGGTATTACTATGAAGAAGATTATTACAAATGCATGGGCT3580.15656638545944362No Hit
CCTCATACTAGGCCTACTAACCAACACACTAACCATATACCAATGATGGCG3470.15175568646487972No Hit
ATCATAATCGGAGGCTTTGGCAACTGACTAGTTCCCCTAATAATCGGTGCC2500.10933406805827069No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)