FastQCFastQC Report
Thu 15 Dec 2022
EGAF00007545365

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007545365
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences228657
Sequences flagged as poor quality0
Sequence length39-51
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCATAATCGGAGGCTTTGGCAACTGACTAGTTCCCCTAATAATCGGTGCCC14510.634574931010203No Hit
GCTAAGGGAGGGTAGACTGTTCAACCTGTTCCTGCTCCGGCCTCCACTAT9840.43033889187735336No Hit
CCTTATTCGAGCCGAGCTGGGCCAGCCAGGCAACCTTCTAGGTAACGACC5880.25715372807305265No Hit
CCTAATTGGGGGGTAGGGGCTAGGCTGGAGTGGTAAAAGGCTCAGAAAAAT5120.22391617138333839No Hit
CCGATTATGATGGGTATTACTATGAAGAAGATTATTACAAATGCATGGGCT3610.15787839427614286No Hit
CCTCATACTAGGCCTACTAACCAACACACTAACCATATACCAATGATGGCG3350.1465076511980827No Hit
ATCATAATCGGAGGCTTTGGCAACTGACTAGTTCCCCTAATAATCGGTGCC3050.13338756303109023No Hit
CCCTTAGCAGGGAACTACTCCCACCCTGGAGCCTCCGTAGACCTAACCATC2500.10933406805827069No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)