FastQCFastQC Report
Thu 15 Dec 2022
EGAF00007545368

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007545368
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences758940
Sequences flagged as poor quality0
Sequence length40-51
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCATAATCGGAGGCTTTGGCAACTGACTAGTTCCCCTAATAATCGGTGCCC33860.4461485756449785No Hit
GCTAAGGGAGGGTAGACTGTTCAACCTGTTCCTGCTCCGGCCTCCACTAT25740.3391572456320658No Hit
CCTTATTCGAGCCGAGCTGGGCCAGCCAGGCAACCTTCTAGGTAACGACC20340.268005375919045No Hit
CCGATTATGATGGGTATTACTATGAAGAAGATTATTACAAATGCATGGGCT11140.14678367196352807No Hit
CCTAATTGGGGGGTAGGGGCTAGGCTGGAGTGGTAAAAGGCTCAGAAAAAT10120.1333438743510686No Hit
CCTCATACTAGGCCTACTAACCAACACACTAACCATATACCAATGATGGCG8660.11410651698421483No Hit
CCCTTAGCAGGGAACTACTCCCACCCTGGAGCCTCCGTAGACCTAACCATC8320.10962658444672833No Hit
ATCATAATCGGAGGCTTTGGCAACTGACTAGTTCCCCTAATAATCGGTGCC7690.10132553298020923No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)