FastQCFastQC Report
Thu 15 Dec 2022
EGAF00007545379

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007545379
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences242464
Sequences flagged as poor quality0
Sequence length39-51
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCATAATCGGAGGCTTTGGCAACTGACTAGTTCCCCTAATAATCGGTGCCC10480.43222911442523426No Hit
GCTAAGGGAGGGTAGACTGTTCAACCTGTTCCTGCTCCGGCCTCCACTAT7590.3130361620694206No Hit
CCTTATTCGAGCCGAGCTGGGCCAGCCAGGCAACCTTCTAGGTAACGACC5970.24622211957239012No Hit
CCTAATTGGGGGGTAGGGGCTAGGCTGGAGTGGTAAAAGGCTCAGAAAAAT4210.1736340240200607No Hit
CCGATTATGATGGGTATTACTATGAAGAAGATTATTACAAATGCATGGGCT3040.12537943777220537No Hit
CCTCATACTAGGCCTACTAACCAACACACTAACCATATACCAATGATGGCG2890.11919295235581365No Hit
CCCTTAGCAGGGAACTACTCCCACCCTGGAGCCTCCGTAGACCTAACCATC2490.10269565791210242No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)