FastQCFastQC Report
Thu 15 Dec 2022
EGAF00007545380

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007545380
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences230654
Sequences flagged as poor quality0
Sequence length40-51
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCATAATCGGAGGCTTTGGCAACTGACTAGTTCCCCTAATAATCGGTGCCC10030.43485046866735455No Hit
GCTAAGGGAGGGTAGACTGTTCAACCTGTTCCTGCTCCGGCCTCCACTAT7730.33513401024911776No Hit
CCTTATTCGAGCCGAGCTGGGCCAGCCAGGCAACCTTCTAGGTAACGACC5010.21720845942407244No Hit
CCTAATTGGGGGGTAGGGGCTAGGCTGGAGTGGTAAAAGGCTCAGAAAAAT4310.18685997207939165No Hit
CCGATTATGATGGGTATTACTATGAAGAAGATTATTACAAATGCATGGGCT2720.11792555082504531No Hit
CCTCATACTAGGCCTACTAACCAACACACTAACCATATACCAATGATGGCG2550.11055520389847996No Hit
CCCTTAGCAGGGAACTACTCCCACCCTGGAGCCTCCGTAGACCTAACCATC2490.10795390498322163No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)