FastQCFastQC Report
Fri 10 May 2024
EGAF00007545399

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007545399
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences8715
Total Bases440.5 kbp
Sequences flagged as poor quality0
Sequence length46-51
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG4234.853700516351118No Hit
GTTCTTGGGTGGGTGTGGGTATAATACTAAGTTGAGATGATATCATTTAC130.1491681009753299No Hit
CCTTGTAACATCTTTACTTCCTTGGAGCAAATTCCCAGGAATGGGTTTTC100.11474469305794606No Hit
ACAGTCACGGAGGATAAGATCAATGCCCTCATTAAAGCAGCCGGTGTAAA100.11474469305794606No Hit
GTCATGAGCAGGGCTTCTCTGTGGAACTGGAAAGTGAAATTTCAACCAC100.11474469305794606No Hit
GCTGAAGAGTGGGGCTGCCCCTTTATGGAAACTTCCGCTAAGAGTAAAAC100.11474469305794606No Hit
GCCAACTCACTTTCCATCATCTCTAGATGAGTCGGACTGTCTTGTGCTCC100.11474469305794606No Hit
CCAGGTACAATTTTTTCCTGTTTTTGATTTGCTTTGTTTTTTCAAGTTTC90.10327022375215145No Hit
GCTATGGTGGGCAAACTAAGCCGATTTTCCGGAAAAAGGCTAAAACTACA90.10327022375215145No Hit
ACAAATTTATTAAGGGAAGAAGAATTTGGTGTTGATGATTCTTATTCTGA90.10327022375215145No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)