FastQCFastQC Report
Thu 15 Dec 2022
EGAF00007545503

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007545503
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13997
Sequences flagged as poor quality0
Sequence length41-51
%GC51

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG1150.8216046295634778No Hit
ACAGATGATAGGATGTTTCATGTGGTGTATGCATCGGGGTAGTCCGAGTA210.15003214974637422No Hit
GCGTTGATACCACTGCTTCATGTACTCTGCGTTGATACCACTGCTTCATGT170.12145459741373152Clontech SMART CDS Primer II A (96% over 26bp)
ATTTATTATAGGCCAGTGATGTCTCAAAGAGTAGAGGAGCGTCTACTGGTC160.11431020933057084No Hit
GCTGTGCACAAGGTTTTGACTTTGGTTAGGATGAGAAGCCACTGGAAGATT150.10716582124741016No Hit
GCACTTTGGGGAGGGGATCACTTGAGGTCAGGAGTTCGAGACCAGCCTGAC150.10716582124741016No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)