FastQCFastQC Report
Thu 15 Dec 2022
EGAF00007545645

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007545645
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2954
Sequences flagged as poor quality0
Sequence length46-51
%GC53

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG662.2342586323628977No Hit
CGCAGAGTGGGGTCACAGGGAACTGCGACTGGGTCAACTTGCTCCTTTCAC90.3046716316858497No Hit
GCTGAAGAGACGCCTGAAAGCTGAGAAGAAAGTAGCAGAGAAGGAGGCCA90.3046716316858497No Hit
GGAGTTAAAGATGCCAGTTTTCTTGCCAATTTATCCTTCTCCAGGGTACTG80.2708192281651997No Hit
AGTAAGGGAGGTCACCAAAAAACCCAAATCCATTTCAGTCATGTCTAGTCT70.23696682464454977No Hit
CCTACCTGCCACCTTTAAGGTGATGTCAGTCAGGTGATCCCCAGGCTGC70.23696682464454977No Hit
CGCAGAGTCCAGGCTTAGACTGCAGTTCCTCGCTTACCTGTGCAGTCTAAT60.2031144211238998No Hit
GGCTGCAGGTGACTATATTTTTGGATGAAGTCAGTGAGTGAGATGTCTAC60.2031144211238998No Hit
GCACAAGGGTTCACAGTTCAGTTAAATGATGCAAACAAAAAGCTTCTGTTT60.2031144211238998No Hit
GCTAACTGTCTTGCTTTGAGTGGACATGATAAAACAGAAGCAAAGGAACA60.2031144211238998No Hit
GGTATCAACGCAGAGTACATGAAGCAGTGGTATCAACGCAGAGTACATGA60.2031144211238998Clontech SMARTer II A Oligonucleotide (100% over 25bp)
CTCCTCGAAGATCATAGAAGATGAGCTTTCCCCCAGAAGCTCTTTTGGCAT60.2031144211238998No Hit
GCAACTTCACCCCCTCTCCTCGAAGATCATAGAAGATGAGCTTTCCCCC50.16926201760324985No Hit
TCACTTCGGCGGCGACCTCGTCGGCGCCCATGCGCTGGGGCAGGTAGACCT50.16926201760324985No Hit
GCACACCAATCAGTTATTATATATCCTTGCAGAGCACAACTGAAGCGTTCT50.16926201760324985No Hit
GGAACTTGTGTGGGTATGGGTCTTCCCCATTGACCTTCAGCTGATGAATTG50.16926201760324985No Hit
GCAGAGAAGGAGGCCAAACAGAAAGAGCTCAGTGAGAAACAGCTAAGCCA50.16926201760324985No Hit
CCTCAGGGGTCCATAAACAATATCTGCCAACTCAACCTGTTGTCTTCAAAT50.16926201760324985No Hit
ACCCCCAACCCGGTGCTCTCTGAAACATGTGCTGTGTCCACTCAGGGTTA50.16926201760324985No Hit
CGCAGAGTGCTGGGATTACAGACGTGAGCCACCATGCCCAGCCTCAGTCAC50.16926201760324985No Hit
CCATTCTCCTTTTTTAGCATTTGAAGACAACAGGTTGAGTTGGCAGATATT50.16926201760324985No Hit
GAAAGGAGGAGGGCGCTCCAGGCGACAGCATTGCAGACGCCATTATCCTCT50.16926201760324985No Hit
CATACTTGATGCTGATACTAGGTTACTTCTTTTTCTTTCCTTTCCCTTTTT50.16926201760324985No Hit
GACAGTACCCTGGAGAAGGATAAATTGGCAAGAAAACTGGCATCTTTAACT50.16926201760324985No Hit
AGTTCTTGGTAGCAGTTTATTACAAGTGCCCAGGCTTCATGATTCATTTCC40.13540961408259986No Hit
CCCTGGAGAAGGATAAATTGGCAAGAAAACTGGCATCTTTAACTCCAGGGT40.13540961408259986No Hit
CGCAGAGTCCGGGTCCAGCTCAAACAGGAAGATGGGAGCCTCTGCCTTGT40.13540961408259986No Hit
CCTCAGACCGTGCCATGGGTGACAGTGATGACGAGTACGATCGAAGGCGC40.13540961408259986No Hit
GCCAAACAGAAAGAGCTCAGTGAGAAACAGCTAAGCCAAGCCACTGCTGCT40.13540961408259986No Hit
GATACAGAGTGGCCTGCAGGGAGCAGCTTTGAGGTATTTCCAGAGCCCCGG40.13540961408259986No Hit
CATGAAGCAGTGGTATCAACGCAGAGTACATGAAGCAGTGGTATCAACGC40.13540961408259986Clontech SMARTer II A Oligonucleotide (100% over 25bp)
GCAGAACCTGCGTTTTCTTCTCTAAGCCACCAATCACTCGTTCAATTGCCT40.13540961408259986No Hit
AAACAGAAGAGGATGAAACAAGTGAAGATGCTAACTGTCTTGCTTTGAGTG40.13540961408259986No Hit
ACCATATGCTGCTATGTTGGCTGCCCAGGATGTGGCCCAGAGGTGCAAGG40.13540961408259986No Hit
CTGATAATGGTGTGGGTCCTGAGGAAGAGAGCGTGGACCCAAATCAATACT40.13540961408259986No Hit
ACATGGGTTACGTGCAGCAGCGCAGGGAGTCCAGCCTGAAATACCAGACTC30.1015572105619499No Hit
GCGAACAAGTGGGACACAGGCAAGACGTCGAGGTCGGTGCAGCAGAGAAAC30.1015572105619499No Hit
CCAGGCCTAGGTGCAGCCTGGCCCTGGGATGGGATGTGGGGAGTGAATGGT30.1015572105619499No Hit
CCTTCCATTAAGAAAAAATTCCTCATAGCTTGCAAGTATTCTACCAACCTG30.1015572105619499No Hit
CCTCCTTCTCCTCCTCAGCCTGGCCGCTCTCTGACTCCGACTCAGACTCTG30.1015572105619499No Hit
GCTGCAGGTGACTATATTTTTGGATGAAGTCAGTGAGTGAGATGTCTACAT30.1015572105619499No Hit
GCCAGGCGGCACCGCCACCTCCTCTCCCCGTAGACAGCGGCCCCGAAACG30.1015572105619499No Hit
CTTATCAAGACTCCAATTTAATTTCACAGCCCATCTGCACAGGGGAACTG30.1015572105619499No Hit
GACAAGGTTCAGCCCACCTTTTGATGCTGCCTTGTACACGCCATAAAGA30.1015572105619499No Hit
CCTGCAGTCTCGAATGGAGGATCGTTTAGACAGACTGGATGATGCAATCC30.1015572105619499No Hit
GCCACTGCTGCTGCCACCAACCACACCACTGATAATGGTGTGGGTCCTG30.1015572105619499No Hit
GTGTGGGTATGGGTCTTCCCCATTGACCTTCAGCTGATGAATTGCTTGACT30.1015572105619499No Hit
GGAGCACAGTGGCATGATCCCGGCTCACCGCAACCTCCACCTACCAGGTTC30.1015572105619499No Hit
TATTTTGCCTGAGATTTTCTCATTGTTCCTGAAGCAGCATCATAGTTAAGC30.1015572105619499No Hit
CCTCACGGTAGTCCAATAGAGCAACCATGCCATCTGGATTCATGTTTTCAC30.1015572105619499No Hit
CCCATCACGTAAGTCAGTAATGTTGTATGCAGCAGAAATGATACCTAAACT30.1015572105619499No Hit
CCTAAATATTAGGCAGATGGGATTGGCTGGTCTGTGCTCTGCTAGGTGAA30.1015572105619499No Hit
TCTGTTTCCCTCCGATACAAATTAGAAGTCTCCATTCATGTCTCTTACAGT30.1015572105619499No Hit
CATGTACTCTGCGTTGATACCACTGCTTCATGTACTCTGCGTTGATACCAC30.1015572105619499Clontech SMART CDS Primer II A (96% over 26bp)
CCAATCACTCGTTCAATTGCCTGTTCAAAGTGTTTCTGATTTATGGAATCT30.1015572105619499No Hit
GTATCAACGCAGAGTCCCAAGAAAACCAAAACAGAAGAGGATGAAACAAGT30.1015572105619499No Hit
CATAGAAGATGAGCTTTCCCCCAGAAGCTCTTTTGGCATGGATCCTACCTG30.1015572105619499No Hit
GCTGCCTGACAGGTTCTTCTCTCCCTGTCTCTGGTCATTGATCCATCTCTT30.1015572105619499No Hit
CAGATTTATCCGGGGCTGGTGATCCATACTTGGATGATATTGATGATG30.1015572105619499No Hit
GAGAAAAAGGGAGCAGGGATCATATTCATGTGCAATGCAAAGACTAAGC30.1015572105619499No Hit
GCTCACTGTGTTTGGTAACTTGCCATACCATATCCGGCTTGGTTAGGAGG30.1015572105619499No Hit
CCCTCTCCTTGTTGAAGACTTTGGTCAGCACCTCCTGTTTTTTGTGTCCTT30.1015572105619499No Hit
TAGGGTGACTAACCATTCTAGTTTACCTAGGACTGTCCTAGTTTTAGAACT30.1015572105619499No Hit
GCACCAATCGACCAGATATCCTGGACTCCGCGCTGCTTAGGCCGGGGCGTT30.1015572105619499No Hit
CTCTCAGAGAGAGGAAGGCAATCTTTATCAATCTTAAACTTAACCTGTGC30.1015572105619499No Hit
CCTGTTCAGTCTCACCAGTGGGGCCTGCCGGCTGGATTACCGCAGACCCG30.1015572105619499No Hit
CCAGAGCATTTGTGTTGTTTGTGGACAGAAGACAGCAGGATGTAACTCAA30.1015572105619499No Hit
CCGATACAAATTAGAAGTCTCCATTCATGTCTCTTACAGTAGTACCACAT30.1015572105619499No Hit
CTCCTCTTCCAAACAAAACATACATTGATCTCTCACATCCAGCTGCCAAA30.1015572105619499No Hit
CCTATGATGGCAAATACAGCTCCTATTGATAGGACATAGTGGAAGTGAGCT30.1015572105619499No Hit
CCCTGCAAATCCTATTCCTGTTATCAAGAATTCAATAAAACTGAGATTGA30.1015572105619499No Hit
CCCTTAATAAGGAAATCAAACTCCACATGTTTGTGGAACTCATTTTTGTCC30.1015572105619499No Hit
ATTAAGGGCCAGTTTCTGCGAATGCCCTTGGACAAACACATGGAAATGG30.1015572105619499No Hit
CTTAATAAGGAAATCAAACTCCACATGTTTGTGGAACTCATTTTTGTCCTT30.1015572105619499No Hit
CCCACACGCCAAGAGTCCAGTGCAACGATCCCTGCCACAGTCTTCTTCTCC30.1015572105619499No Hit
ACTTTATTGTAAGAATACAGTAGATGGGGCGTGGCGGCTCACACATGTAAT30.1015572105619499No Hit
AGAAGCTCTTTTGGCATGGATCCTACCTGCCACCTTTAAGGTGATGTCAGT30.1015572105619499No Hit
GGGAGCGAATATAAGGATATGTCGTTGGCTGTGTATGAAATGGGAACCTT30.1015572105619499No Hit
AATCTTGCTAGGTTGGGCTTTTTGCTTTCTGGTGTCGTGTAGGCACCATGT30.1015572105619499No Hit
GGTGCAGAGAGGGAGAAAGCCAATCCAGTTGTACTGCTATGAGATGTCTT30.1015572105619499No Hit
GCCACCTTTAAGGTGATGTCAGTCAGGTGATCCCCAGGCTGCAGGTGACT30.1015572105619499No Hit
GTTTATTGATGATGTTACTAAGGTCGGCAATTTCAGAGGCAGCAGGGATTG30.1015572105619499No Hit
GCCTGAAAGCTGAGAAGAAAGTAGCAGAGAAGGAGGCCAAACAGAAAGAGC30.1015572105619499No Hit
GGTGTATTTGTCCTGTGAGTGTCTGACTCTATCACTTTCAAAGCTGTGCTG30.1015572105619499No Hit
GCCATGGCTCAGCTCCAAACACGCTTCTACACTGATAACAAGAAATATGCC30.1015572105619499No Hit
CAACAAATGTCGTCATTTTGGCCGGCACCAATCGACCAGATATCCTGGACC30.1015572105619499No Hit
GCTTTCTTAAGGACTTTTTGATCCTGCTTCAGCTTCTGCTCCAATGTGGGT30.1015572105619499No Hit
CCCGAATCTGAAGGTCGTCGGCCTCGGCCTGCAGCTTCTGCACCAGGTGTT30.1015572105619499No Hit
GTCCCTTAGAGCCAGTTTTTGCTTAAGGGGAGGACAGACCGTCGTCACCC30.1015572105619499No Hit
CTGCGACTGGGTCAACTTGCTCCTTTCACAGCGCCTCACAAGGACAAGTC30.1015572105619499No Hit
GAGTACATGGGTGTGGTTTGGCCAAAATGCAATGGACCCCGACCCCTCCTC30.1015572105619499No Hit
ACCTCCGAGCAGTACATGCTAAGACTTCACCAGTCAAAGCGAACTACTAT30.1015572105619499No Hit
GGAGAAGGATAAATTGGCAAGAAAACTGGCATCTTTAACTCCAGGGTTTTC30.1015572105619499No Hit
CTCTACTGCACTTCCTTGAAGATGAAAAATATGAAGAGGTTATGGCTGTCC30.1015572105619499No Hit
CCTTATTAAGGGCCAGTTTCTGCGAATGCCCTTGGACAAACACATGGAAAT30.1015572105619499No Hit
GAGTACATGAAGCAGTGGTATCAACGCAGAGTACATGAAGCAGTGGTATC30.1015572105619499Clontech SMARTer II A Oligonucleotide (100% over 25bp)
GCTCTCCCTGCAAATCCTATTCCTGTTATCAAGAATTCAATAAAACTG30.1015572105619499No Hit
TCCCGGACAAGGTTCAGCCCACCTTTTGATGCTGCCTTGTACACGCCATA30.1015572105619499No Hit
CCGGAGGCCGGGCGTGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGG30.1015572105619499No Hit

[OK]Adapter Content

Adapter graph