FastQCFastQC Report
Wed 8 May 2024
EGAF00007545688

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007545688
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences574417
Total Bases29 Mbp
Sequences flagged as poor quality0
Sequence length39-51
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCATAATCGGAGGCTTTGGCAACTGACTAGTTCCCCTAATAATCGGTGCC23500.40911045460005535No Hit
GCTAAGGGAGGGTAGACTGTTCAACCTGTTCCTGCTCCGGCCTCCACTAT17180.29908585574591284No Hit
CCTTATTCGAGCCGAGCTGGGCCAGCCAGGCAACCTTCTAGGTAACGACC11340.19741755553892032No Hit
CCGATTATGATGGGTATTACTATGAAGAAGATTATTACAAATGCATGGGC6300.10967641974384464No Hit
ACAGATGATAGGATGTTTCATGTGGTGTATGCATCGGGGTAGTCCGAGTA5890.10253874798273727No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)