FastQCFastQC Report
Thu 15 Dec 2022
EGAF00007545697

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007545697
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences620235
Sequences flagged as poor quality0
Sequence length38-51
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCATAATCGGAGGCTTTGGCAACTGACTAGTTCCCCTAATAATCGGTGCCC28030.4519254798584407No Hit
GCTAAGGGAGGGTAGACTGTTCAACCTGTTCCTGCTCCGGCCTCCACTAT20140.32471563197820186No Hit
CCTTATTCGAGCCGAGCTGGGCCAGCCAGGCAACCTTCTAGGTAACGACC12140.19573226277136893No Hit
CCGATTATGATGGGTATTACTATGAAGAAGATTATTACAAATGCATGGGCT8350.13462639160963183No Hit
CCTAATTGGGGGGTAGGGGCTAGGCTGGAGTGGTAAAAGGCTCAGAAAAAT7840.12640370182269625No Hit
ACAGATGATAGGATGTTTCATGTGGTGTATGCATCGGGGTAGTCCGAGTA7370.1188259288817948No Hit
CCTCATACTAGGCCTACTAACCAACACACTAACCATATACCAATGATGGCG6710.1081848009222311No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)