FastQCFastQC Report
Thu 15 Dec 2022
EGAF00007545698

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007545698
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences500462
Sequences flagged as poor quality0
Sequence length39-51
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCATAATCGGAGGCTTTGGCAACTGACTAGTTCCCCTAATAATCGGTGCCC30960.61862838737007No Hit
GCTAAGGGAGGGTAGACTGTTCAACCTGTTCCTGCTCCGGCCTCCACTAT22500.4495845838445277No Hit
CCTTATTCGAGCCGAGCTGGGCCAGCCAGGCAACCTTCTAGGTAACGACC12580.25136773621174036No Hit
CCTAATTGGGGGGTAGGGGCTAGGCTGGAGTGGTAAAAGGCTCAGAAAAAT11490.22958786081660548No Hit
CCTCATACTAGGCCTACTAACCAACACACTAACCATATACCAATGATGGCG9310.18602811002633568No Hit
CCGATTATGATGGGTATTACTATGAAGAAGATTATTACAAATGCATGGGCT8270.1652473114841886No Hit
ATCATAATCGGAGGCTTTGGCAACTGACTAGTTCCCCTAATAATCGGTGCC6460.12908072940602883No Hit
ACAGATGATAGGATGTTTCATGTGGTGTATGCATCGGGGTAGTCCGAGTA5940.1186903301349553No Hit
CCTAAGATAGAGGAGACACCTGCTAGGTGTAAGGAGAAGATGGTTAGGTCT5550.11089753068165016No Hit
CCTATGATGGCAAATACAGCTCCTATTGATAGGACATAGTGGAAGTGAGCT5440.1086995616050769No Hit
GCTTGTAGGAGGGTAAAATAGAGACCCAGTAAAATTGTAATGAGCAGTGCT5090.10170602363416203No Hit
CCTACAAGCCTCAGAGTACTTCGAGTCTCCCTTCACCATTTCCGACGGCAT5070.10130639289296689No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)