FastQCFastQC Report
Thu 15 Dec 2022
EGAF00007545700

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007545700
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences472441
Sequences flagged as poor quality0
Sequence length38-51
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCATAATCGGAGGCTTTGGCAACTGACTAGTTCCCCTAATAATCGGTGCCC29580.6261099269538418No Hit
GCTAAGGGAGGGTAGACTGTTCAACCTGTTCCTGCTCCGGCCTCCACTAT20900.44238328172195046No Hit
CCTTATTCGAGCCGAGCTGGGCCAGCCAGGCAACCTTCTAGGTAACGACC11900.25188330394694786No Hit
CCTAATTGGGGGGTAGGGGCTAGGCTGGAGTGGTAAAAGGCTCAGAAAAAT10970.2321983062435309No Hit
CCTCATACTAGGCCTACTAACCAACACACTAACCATATACCAATGATGGCG8840.18711331150344698No Hit
CCGATTATGATGGGTATTACTATGAAGAAGATTATTACAAATGCATGGGCT7700.16298331431861332No Hit
ATCATAATCGGAGGCTTTGGCAACTGACTAGTTCCCCTAATAATCGGTGCC6140.1299633181709462No Hit
CCTAAGATAGAGGAGACACCTGCTAGGTGTAAGGAGAAGATGGTTAGGTCT5470.11578165315880715No Hit
CCTACAAGCCTCAGAGTACTTCGAGTCTCCCTTCACCATTTCCGACGGCAT4930.10435165449230697No Hit
ACAGATGATAGGATGTTTCATGTGGTGTATGCATCGGGGTAGTCCGAGTA4770.10096498822075137No Hit
CCTATGATGGCAAATACAGCTCCTATTGATAGGACATAGTGGAAGTGAGCT4760.10075332157877914No Hit
GCTTGTAGGAGGGTAAAATAGAGACCCAGTAAAATTGTAATGAGCAGTGCT4730.10011832165286248No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)