FastQCFastQC Report
Thu 15 Dec 2022
EGAF00007545715

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007545715
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences38526
Sequences flagged as poor quality0
Sequence length45-51
%GC51

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCTTCTCTATTCTTTTCTTCGCCTTCCCGTACTTCTGTCTTCCAGTTTTC2180.5658516326636557No Hit
CCCGTACTTCTGTCTTCCAGTTTTCCACTTCAAACTTCTATCTTCTCCAA1460.37896485490318227No Hit
AGTTAACGCATTTACTAAACGCAGACGAAAATGGAAAGATTAATTGGGAGT1200.3114779629341224No Hit
CATCAATAGATGGAGACATACAGAAATAGTCAAACCACATCTACAAAATGC860.22322587343612108No Hit
CCTACAAGCCTCAGAGTACTTCGAGTCTCCCTTCACCATTTCCGACGGCAT600.1557389814670612No Hit
ATTAAACCGAAGGTGATTAAAAGACCTTGAAATCCATGACGCAGGGAGAAT590.1531433317759435No Hit
GTTCTGAGTCGGTTGTTCGACGCCCGGGGAAGGCCCCCGAGAGGGCCGTTC490.12718683486476665No Hit
GCTTGAGAATCGGGTAGTACCCCTACTCGAATTGTAGTCTGGAGAGGCGTC470.12199553548253128No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG460.1193998857914136No Hit
CCACTATAGCAGATGCGAGCAGGAGTAGGAGAGAGGGAGGTAAGAGTC450.1168042361002959No Hit
ACTTCTGTCTTCCAGTTTTCCACTTCAAACTTCTATCTTCTCCAAATTGTT390.1012303379535898No Hit
GCCCATGACCCCTAACAGGGGCCCTCTCAGCCCTCCTAATGACCTCCGGCC390.1012303379535898No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)