FastQCFastQC Report
Thu 15 Dec 2022
EGAF00007545729

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007545729
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences794527
Sequences flagged as poor quality0
Sequence length35-51
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCATAATCGGAGGCTTTGGCAACTGACTAGTTCCCCTAATAATCGGTGCCC14060.1769606319231442No Hit
GCTAAGGGAGGGTAGACTGTTCAACCTGTTCCTGCTCCGGCCTCCACTAT10890.1370626800599602No Hit
CCTAATTGGGGGGTAGGGGCTAGGCTGGAGTGGTAAAAGGCTCAGAAAAAT9840.12384727013682355No Hit
CCTTATTCGAGCCGAGCTGGGCCAGCCAGGCAACCTTCTAGGTAACGACC9610.12095246605842219No Hit
CCTCATACTAGGCCTACTAACCAACACACTAACCATATACCAATGATGGCG8780.11050599916679986No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)