FastQCFastQC Report
Thu 15 Dec 2022
EGAF00007545734

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007545734
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1507715
Sequences flagged as poor quality0
Sequence length40-51
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTTATTCGAGCCGAGCTGGGCCAGCCAGGCAACCTTCTAGGTAACGACC27730.18392070119352796No Hit
TCATAATCGGAGGCTTTGGCAACTGACTAGTTCCCCTAATAATCGGTGCCC24950.16548220320153345No Hit
CCACTATAGCAGATGCGAGCAGGAGTAGGAGAGAGGGAGGTAAGAGTC21360.1416713370895693No Hit
GCTAAGGGAGGGTAGACTGTTCAACCTGTTCCTGCTCCGGCCTCCACTAT20110.13338064554640633No Hit
CCTCATACTAGGCCTACTAACCAACACACTAACCATATACCAATGATGGCG16910.11215647519590904No Hit
CCTACAAGCCTCAGAGTACTTCGAGTCTCCCTTCACCATTTCCGACGGCAT16310.1081769432551908No Hit
CCGATTATGATGGGTATTACTATGAAGAAGATTATTACAAATGCATGGGCT15940.10572289855841455No Hit
GATGTTCGCCGACCGTTGACTATTCTCTACAAACCACAAAGACATTGGAAC15700.10413108578212725No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)