FastQCFastQC Report
Thu 15 Dec 2022
EGAF00007545743

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007545743
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences19489
Sequences flagged as poor quality0
Sequence length45-51
%GC55

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTATAGTGGAGGCCGGAGCAGGAACAGGTTGAACAGTCTACCCTCCCTT360.18471958540715275No Hit
GCTAAGGGAGGGTAGACTGTTCAACCTGTTCCTGCTCCGGCCTCCACTAT340.1744573862178665No Hit
CCTCATACTAGGCCTACTAACCAACACACTAACCATATACCAATGATGGCG310.1590640874339371No Hit
TCATAATCGGAGGCTTTGGCAACTGACTAGTTCCCCTAATAATCGGTGCCC280.14367078865000768No Hit
CCACTATAGCAGATGCGAGCAGGAGTAGGAGAGAGGGAGGTAAGAGTC230.11801529067679203No Hit
GGTGTGTGGTGGCCTTGGTATGTGCTTTCTCGTGTTACATCGCGCCATCAT220.1128841910821489No Hit
CCTAAGATAGAGGAGACACCTGCTAGGTGTAAGGAGAAGATGGTTAGGTCT220.1128841910821489No Hit
CCTCCGGCGGGGTCGAAGAAGGTGGTGTTGAGGTTGCGGTCTGTTAGTAGT210.10775309148750578No Hit
GCTAGGTGTAAGGAGAAGATGGTTAGGTCTACGGAGGCTCCAGGGTGGG200.10262199189286264No Hit
GCCCATGACCCCTAACAGGGGCCCTCTCAGCCCTCCTAATGACCTCCGGCC200.10262199189286264No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)