FastQCFastQC Report
Thu 15 Dec 2022
EGAF00007545744

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007545744
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences18256
Sequences flagged as poor quality0
Sequence length43-51
%GC55

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCATAATCGGAGGCTTTGGCAACTGACTAGTTCCCCTAATAATCGGTGCCC350.19171779141104295No Hit
GCTAAGGGAGGGTAGACTGTTCAACCTGTTCCTGCTCCGGCCTCCACTAT320.175284837861525No Hit
GCTATAGTGGAGGCCGGAGCAGGAACAGGTTGAACAGTCTACCCTCCCTT310.16980718667835232No Hit
CCACTATAGCAGATGCGAGCAGGAGTAGGAGAGAGGGAGGTAAGAGTC250.1369412795793164No Hit
CCTCATACTAGGCCTACTAACCAACACACTAACCATATACCAATGATGGCG250.1369412795793164No Hit
TTTTGGACAGGTGGTGTGTGGTGGCCTTGGTATGTGCTTTCTCGTGTTAC190.10407537248028045No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)