FastQCFastQC Report
Thu 15 Dec 2022
EGAF00007545799

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007545799
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences615834
Sequences flagged as poor quality0
Sequence length51
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGCTATTAGAAGGATTATGGATGCGGTTGCTTGCGTGAGGAAATACTTGAT15150.24600785276551795No Hit
GGCCCAACCCGTCATCTACTCTACCATCTTTGCAGGCACACTCATCACAGC14940.24259784292520384No Hit
CCTAGCCTTACTACTAATAATTATTACATTTTGACTACCACAACTCAACGG12170.1976181893172511No Hit
ACTGAGGCGAGCGGTCAAACCCGATCCTCGATTGGTGCAGCATGATACCAA10860.17634622317052973No Hit
GTTAGATATGGGGAGTAGTGTGATTGAGGTGGAGTAGATTAGGCGTAGGTA10840.17602146032859506No Hit
ATCCTCGATTGGTGCAGCATGATACCAATCGGTGACGTTCCCTGTGCCCCT10840.17602146032859506No Hit
GAGATAGGTAGGAGTAGCGTGGTAAGGGCGATGAGTGTGGGGAGGAATGGG10820.17569669748666036No Hit
ACTAAATACTACCGTATGGCCCACCATAATTACCCCCATACTCCTTACACT10650.1729362133302156No Hit
GGTAGGTGGTAGTTTGTGTTTAATATTTTTAGTTGGGTGATGAGGAATAGT10120.16432999801894665No Hit
GGCACAGGGAACGTCACCGATTGGTATCATGCTGCACCAATCGAGGATCTG9520.15458711276090634No Hit
ATCCTCGATTGGTGCAGCATGATACCAATCGGTGACGTTCCCTGTGCCCTG9280.15068995865769022No Hit
ATCCTCGATTGGTGCAGCATGATACCAATCGGTGACGTTCCCTGTGCCTGT9040.1467928045544741No Hit
CCTCGATTGGTGCAGCATGATACCAATCGGTGACGTTCCCTGTGCCTGTCT8490.13786182640127048No Hit
CCACAATCCTAGGCCTACCCGCCGCAGTACTGATCATTCTATTTCCCCCTC8450.13721230071740112No Hit
GCACAGGGAACGTCACCGATTGGTATCATGCTGCACCAATCGAGGCTGTCT8420.1367251564544991No Hit
ATCATAGAAGAGCTTATCACCTTTCATGATCACGCCCTCATAATCATTTTC8300.13477657940289103No Hit
GCACAGGGAACGTCACCGATTGGTATCATGCTGCACCAATCGAGGATCTGT8180.13282800235128298No Hit
GTAATGATGTCGGGGTTGAGGGATAGGAGGAGAATGGGGGATAGGTGTATG8170.13266562093031564No Hit
GGGCACAGGGAACGTCACCGATTGGTATCATGCTGCACCAATCGAGGATCT8160.1325032395093483No Hit
ACTACTATCTCGCACCTGAAACAAGCTAACATGACTAACACCCTTAATTCC8110.1316913324045116No Hit
CCTCGATTGGTGCAGCATGATACCAATCGGTGACGTTCCCTGTGCCCTGTC7900.1282813225641975No Hit
GGGCACAGGGAACGTCACCGATTGGTATCATGCTGCACCAATCGAGGATCG7870.12779417830129547No Hit
GGCACAGGGAACGTCACCGATTGGTATCATGCTGCACCAATCGAGGATCGG7850.1274694154593608No Hit
CCTCGATTGGTGCAGCATGATACCAATCGGTGACGTTCCCTGTGCCCCTGT7780.12633274551258944No Hit
GGCACAGGGAACGTCACCGATTGGTATCATGCTGCACCAATCGAGGCTGTC7590.12324749851420999No Hit
CGTTCCACAGAAGCTGCCATCAAGTATTTCCTCACGCAAGCAACCGCATCC7240.11756414878035315No Hit
GCACAGGGAACGTCACCGATTGGTATCATGCTGCACCAATCGAGGATCGGG7160.11626509741261444No Hit
GACTTAGGGCTAGGATGATGATTAATAAGAGGGATGACATAACTATTAGTG6940.11269270615133298No Hit
GGTACTGAGGCGAGCGGTCAAACCCGATCCTCGATTGGTGCAGCATGATAC6670.10830840778521486No Hit
GGGCACAGGGAACGTCACCGATTGGTATCATGCTGCACCAATCGAGGCTGT6550.10635983073360679No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)