FastQCFastQC Report
Wed 8 May 2024
EGAF00007545985

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007545985
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1042852
Total Bases53.1 Mbp
Sequences flagged as poor quality0
Sequence length51
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGCACAGGGAACGTCACCGATTGGTATCATGCTGCACCAATCGAGGATC30000.28767265153636373No Hit
ACTGAGGCGAGCGGTCAAACCCGATCCTCGATTGGTGCAGCATGATACCA21770.20875445413155463No Hit
GGCACAGGGAACGTCACCGATTGGTATCATGCTGCACCAATCGAGGATCG17370.16656246523955462No Hit
ATCCTCGATTGGTGCAGCATGATACCAATCGGTGACGTTCCCTGTGCCCC16290.15620624978424552No Hit
GCACAGGGAACGTCACCGATTGGTATCATGCTGCACCAATCGAGGATCGG14830.14220618074280914No Hit
CCTCGATTGGTGCAGCATGATACCAATCGGTGACGTTCCCTGTGCCCCTG13670.1310828382167364No Hit
CCTAGCCTTACTACTAATAATTATTACATTTTGACTACCACAACTCAACG13560.13002803849443642No Hit
ATCCTCGATTGGTGCAGCATGATACCAATCGGTGACGTTCCCTGTGCCCT13120.12580883960523642No Hit
GGTACTGAGGCGAGCGGTCAAACCCGATCCTCGATTGGTGCAGCATGATA12630.12111018629680913No Hit
GGCCCAACCCGTCATCTACTCTACCATCTTTGCAGGCACACTCATCACAG12580.12063073187758187No Hit
AGCTATTAGAAGGATTATGGATGCGGTTGCTTGCGTGAGGAAATACTTGA12250.11746633271068187No Hit
ATCCTCGATTGGTGCAGCATGATACCAATCGGTGACGTTCCCTGTGCCTG11440.10969917111920004No Hit
CCTCGATTGGTGCAGCATGATACCAATCGGTGACGTTCCCTGTGCCCTGT11380.10912382581612731No Hit
ACTAAATACTACCGTATGGCCCACCATAATTACCCCCATACTCCTTACAC11370.10902793493228186No Hit
ATCATAGAAGAGCTTATCACCTTTCATGATCACGCCCTCATAATCATTTT10750.10308270013386367No Hit
CCTCGATTGGTGCAGCATGATACCAATCGGTGACGTTCCCTGTGCCTGTC10640.10202790041156366No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)