FastQCFastQC Report
Thu 15 Dec 2022
EGAF00007546086

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007546086
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences748407
Sequences flagged as poor quality0
Sequence length51
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGCTATTAGAAGGATTATGGATGCGGTTGCTTGCGTGAGGAAATACTTGAT25170.3363143316404042No Hit
GGCCCAACCCGTCATCTACTCTACCATCTTTGCAGGCACACTCATCACAGC24500.32736198351966245No Hit
GAGATAGGTAGGAGTAGCGTGGTAAGGGCGATGAGTGTGGGGAGGAATGGG17840.23837297085676645No Hit
CCTAGCCTTACTACTAATAATTATTACATTTTGACTACCACAACTCAACGG17080.22821806851085039No Hit
GTTAGATATGGGGAGTAGTGTGATTGAGGTGGAGTAGATTAGGCGTAGGTA16410.21926572039010858No Hit
ACTAAATACTACCGTATGGCCCACCATAATTACCCCCATACTCCTTACACT16370.2187312518455867No Hit
GGTAGGTGGTAGTTTGTGTTTAATATTTTTAGTTGGGTGATGAGGAATAGT14180.1894690990330128No Hit
CGTTCCACAGAAGCTGCCATCAAGTATTTCCTCACGCAAGCAACCGCATCC13200.1763746196922263No Hit
CATCAATAGATGGAGACATACAGAAATAGTCAAACCACATCTACAAAATGC12840.1715644027915292No Hit
GGTAGAGGGGGTGCTATAGGGTAAATACGGGCCCTATTTCAAAGATTTTTA12240.16354737462370075No Hit
ATCATAGAAGAGCTTATCACCTTTCATGATCACGCCCTCATAATCATTTTC11190.14951757533000093No Hit
ACTGAGGCGAGCGGTCAAACCCGATCCTCGATTGGTGCAGCATGATACCAA11030.14737970115191332No Hit
GACTTAGGGCTAGGATGATGATTAATAAGAGGGATGACATAACTATTAGTG10880.1453754441099562No Hit
ACTACTATCTCGCACCTGAAACAAGCTAACATGACTAACACCCTTAATTCC10400.13896182157569345No Hit
GTAATGATGTCGGGGTTGAGGGATAGGAGGAGAATGGGGGATAGGTGTATG10300.1376256502143887No Hit
GGAATAGCCCCCTTTCACTTCTGAGTCCCAGAGGTTACCCAAGGCACCCCT9800.13094479340786497No Hit
AGTATGAGGAGCGTTATGGAGTGGAAGTGAAATCACATGGCTAGGCCGGAG8950.11958733683677464No Hit
GCTATTCCTAGTTTTATTGCTATAGCCATTATGATTATTAATGATGAGTAT8280.11063498871603285No Hit
ACCATCTTTGCAGGCACACTCATCACAGCGCTAAGCTCGCACTGATTTTTT8190.10943243449085858No Hit
GATTAATAAGAGGGATGACATAACTATTAGTGGCAGGTTAGTTGTTTGTAG7920.10582477181533577No Hit
GATATTGCTAGGGTGGCGCTTCCAATTAGGTGCATGAGTAGGTGGCCTGCA7760.10368689763724818No Hit
GGTACTGAGGCGAGCGGTCAAACCCGATCCTCGATTGGTGCAGCATGATAC7760.10368689763724818No Hit
CCACAATCCTAGGCCTACCCGCCGCAGTACTGATCATTCTATTTCCCCCTC7720.10315242909272627No Hit
GGCACAGGGAACGTCACCGATTGGTATCATGCTGCACCAATCGAGGATCGG7660.10235072627594344No Hit
CCAATCACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGG7600.10154902345916059No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)