FastQCFastQC Report
Thu 15 Dec 2022
EGAF00007546087

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007546087
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences748407
Sequences flagged as poor quality0
Sequence length51
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCCAACCCGTCATCTACTCTACCATCTTTGCAGGCACACTCATCACAGC26710.35689137060449727No Hit
AGCTATTAGAAGGATTATGGATGCGGTTGCTTGCGTGAGGAAATACTTGAT22470.30023770488517615No Hit
CCTAGCCTTACTACTAATAATTATTACATTTTGACTACCACAACTCAACGG17610.23529977672576552No Hit
GAGATAGGTAGGAGTAGCGTGGTAAGGGCGATGAGTGTGGGGAGGAATGGG16420.21939933752623905No Hit
ACTAAATACTACCGTATGGCCCACCATAATTACCCCCATACTCCTTACACT15410.20590400677706114No Hit
GTTAGATATGGGGAGTAGTGTGATTGAGGTGGAGTAGATTAGGCGTAGGTA15180.20283081264606023No Hit
GGTAGGTGGTAGTTTGTGTTTAATATTTTTAGTTGGGTGATGAGGAATAGT13930.18612867062975091No Hit
CGTTCCACAGAAGCTGCCATCAAGTATTTCCTCACGCAAGCAACCGCATCC13790.1842580307239243No Hit
ATCATAGAAGAGCTTATCACCTTTCATGATCACGCCCTCATAATCATTTTC12070.16127588330948267No Hit
CATCAATAGATGGAGACATACAGAAATAGTCAAACCACATCTACAAAATGC11420.15259076946100184No Hit
ACTGAGGCGAGCGGTCAAACCCGATCCTCGATTGGTGCAGCATGATACCAA11120.1485822553770876No Hit
GGTAGAGGGGGTGCTATAGGGTAAATACGGGCCCTATTTCAAAGATTTTTA10850.1449745927015648No Hit
ACTACTATCTCGCACCTGAAACAAGCTAACATGACTAACACCCTTAATTCC10580.14136693002604198No Hit
GGAATAGCCCCCTTTCACTTCTGAGTCCCAGAGGTTACCCAAGGCACCCCT10290.13749203307825822No Hit
CCACAATCCTAGGCCTACCCGCCGCAGTACTGATCATTCTATTTCCCCCTC9220.12319499951229744No Hit
GTAATGATGTCGGGGTTGAGGGATAGGAGGAGAATGGGGGATAGGTGTATG8980.11998818824516606No Hit
ACCATCTTTGCAGGCACACTCATCACAGCGCTAAGCTCGCACTGATTTTTT8950.11958733683677464No Hit
GACTTAGGGCTAGGATGATGATTAATAAGAGGGATGACATAACTATTAGTG8920.11918648542838323No Hit
AGTATGAGGAGCGTTATGGAGTGGAAGTGAAATCACATGGCTAGGCCGGAG8530.11397541711929472No Hit
GGCACAGGGAACGTCACCGATTGGTATCATGCTGCACCAATCGAGGATCGG8270.11050137157990238No Hit
GGGCACAGGGAACGTCACCGATTGGTATCATGCTGCACCAATCGAGGATCG7930.10595838895146624No Hit
CCAATCACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGG7590.10141540632303012No Hit
CCCTACTATGCCTAGAAGGAATAATACTATCGCTGTTCATTATAGCTACTC7550.1008809377785082No Hit
GATATTGCTAGGGTGGCGCTTCCAATTAGGTGCATGAGTAGGTGGCCTGCA7500.10021285209785584No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)