FastQCFastQC Report
Thu 15 Dec 2022
EGAF00007546088

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007546088
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences729139
Sequences flagged as poor quality0
Sequence length51
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGCTATTAGAAGGATTATGGATGCGGTTGCTTGCGTGAGGAAATACTTGAT24950.3421844120256906No Hit
GGCCCAACCCGTCATCTACTCTACCATCTTTGCAGGCACACTCATCACAGC24590.3372470818321335No Hit
GAGATAGGTAGGAGTAGCGTGGTAAGGGCGATGAGTGTGGGGAGGAATGGG17810.24426069652014226No Hit
ACTAAATACTACCGTATGGCCCACCATAATTACCCCCATACTCCTTACACT16290.2234141912584569No Hit
GTTAGATATGGGGAGTAGTGTGATTGAGGTGGAGTAGATTAGGCGTAGGTA15780.21641964015091772No Hit
CCTAGCCTTACTACTAATAATTATTACATTTTGACTACCACAACTCAACGG15260.2092879409824464No Hit
GGTAGGTGGTAGTTTGTGTTTAATATTTTTAGTTGGGTGATGAGGAATAGT14360.19694461549855374No Hit
CGTTCCACAGAAGCTGCCATCAAGTATTTCCTCACGCAAGCAACCGCATCC12180.16704633821534715No Hit
CATCAATAGATGGAGACATACAGAAATAGTCAAACCACATCTACAAAATGC11660.15991463904687583No Hit
GGTAGAGGGGGTGCTATAGGGTAAATACGGGCCCTATTTCAAAGATTTTTA11520.15799456619382587No Hit
ACTGAGGCGAGCGGTCAAACCCGATCCTCGATTGGTGCAGCATGATACCAA11360.1558001972189116No Hit
ATCATAGAAGAGCTTATCACCTTTCATGATCACGCCCTCATAATCATTTTC11140.15278293987840452No Hit
ACTACTATCTCGCACCTGAAACAAGCTAACATGACTAACACCCTTAATTCC10900.14949138641603316No Hit
GACTTAGGGCTAGGATGATGATTAATAAGAGGGATGACATAACTATTAGTG10830.14853134998950818No Hit
GGAATAGCCCCCTTTCACTTCTGAGTCCCAGAGGTTACCCAAGGCACCCCT9690.13289647104324415No Hit
GTAATGATGTCGGGGTTGAGGGATAGGAGGAGAATGGGGGATAGGTGTATG9490.13015350982460136No Hit
ACCATCTTTGCAGGCACACTCATCACAGCGCTAAGCTCGCACTGATTTTTT8410.11534151924393017No Hit
AGTATGAGGAGCGTTATGGAGTGGAAGTGAAATCACATGGCTAGGCCGGAG8220.1127357060862195No Hit
CCACAATCCTAGGCCTACCCGCCGCAGTACTGATCATTCTATTTCCCCCTC8170.11204996578155879No Hit
GATTAATAAGAGGGATGACATAACTATTAGTGGCAGGTTAGTTGTTTGTAG7930.10875841231918743No Hit
CCAATCACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGG7780.10670119140520531No Hit
GCTATTCCTAGTTTTATTGCTATAGCCATTATGATTATTAATGATGAGTAT7740.10615259916147675No Hit
GATATTGCTAGGGTGGCGCTTCCAATTAGGTGCATGAGTAGGTGGCCTGCA7430.10190100927258039No Hit
GCTTTGGTGAGGGAGGTAGGTGGTAGTTTGTGTTTAATATTTTTAGTTGGG7300.10011808448046257No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)