FastQCFastQC Report
Wed 8 May 2024
EGAF00007546140

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007546140
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences712549
Total Bases36.3 Mbp
Sequences flagged as poor quality0
Sequence length51
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGCACAGGGAACGTCACCGATTGGTATCATGCTGCACCAATCGAGGATC17190.24124656690276738No Hit
ACTGAGGCGAGCGGTCAAACCCGATCCTCGATTGGTGCAGCATGATACCA10510.14749862816451922No Hit
ATCCTCGATTGGTGCAGCATGATACCAATCGGTGACGTTCCCTGTGCCCC8450.11858833567937083No Hit
GGCACAGGGAACGTCACCGATTGGTATCATGCTGCACCAATCGAGGATCG7670.10764172007819814No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)