FastQCFastQC Report
Thu 15 Dec 2022
EGAF00007546174

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007546174
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1095566
Sequences flagged as poor quality0
Sequence length51
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTAATGATGTCGGGGTTGAGGGATAGGAGGAGAATGGGGGATAGGTGTATG17350.1583656301856757No Hit
CCACAATCCTAGGCCTACCCGCCGCAGTACTGATCATTCTATTTCCCCCTC15240.13910617890661084No Hit
CATCAATAGATGGAGACATACAGAAATAGTCAAACCACATCTACAAAATGC14040.12815293647301942No Hit
TCATAATCGGAGGCTTTGGCAACTGACTAGTTCCCCTAATAATCGGTGCCC13090.11948161954642622No Hit
AGCTATTAGAAGGATTATGGATGCGGTTGCTTGCGTGAGGAAATACTTGAT12520.11427882939047032No Hit
AGTATGAGGAGCGTTATGGAGTGGAAGTGAAATCACATGGCTAGGCCGGAG12280.11208818090375204No Hit
GGTAGGTGGTAGTTTGTGTTTAATATTTTTAGTTGGGTGATGAGGAATAGT11980.10934987029535417No Hit
ACTAAATACTACCGTATGGCCCACCATAATTACCCCCATACTCCTTACACT11920.10880220817367461No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)