FastQCFastQC Report
Thu 15 Dec 2022
EGAF00007546176

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007546176
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1073968
Sequences flagged as poor quality0
Sequence length51
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTAATGATGTCGGGGTTGAGGGATAGGAGGAGAATGGGGGATAGGTGTATG16290.15168049699804836No Hit
CCACAATCCTAGGCCTACCCGCCGCAGTACTGATCATTCTATTTCCCCCTC14640.13631691074594401No Hit
CATCAATAGATGGAGACATACAGAAATAGTCAAACCACATCTACAAAATGC14030.130637039464863No Hit
AGTATGAGGAGCGTTATGGAGTGGAAGTGAAATCACATGGCTAGGCCGGAG13070.12169822564545685No Hit
AGCTATTAGAAGGATTATGGATGCGGTTGCTTGCGTGAGGAAATACTTGAT12690.11815994517527524No Hit
TCATAATCGGAGGCTTTGGCAACTGACTAGTTCCCCTAATAATCGGTGCCC12670.11797371988737096No Hit
GGTAGGTGGTAGTTTGTGTTTAATATTTTTAGTTGGGTGATGAGGAATAGT12000.11173517274257706No Hit
ACTAAATACTACCGTATGGCCCACCATAATTACCCCCATACTCCTTACACT11410.10624152674940035No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)